PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00688.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 282aa    MW: 31990.2 Da    PI: 4.8873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00688.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161663148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEd++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Rsa1.0_00688.1_g00007.1 16 RGPWSPEEDLKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYL 63
                             89******************************99************97 PP

2Myb_DNA-binding52.98.2e-1769114148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE+e ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
  Rsa1.0_00688.1_g00007.1  69 RGNFSAEEEEMIIKLHQSYGNK-WSKIASQLP-GRTDNEIKNVWHTHL 114
                              89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24766IPR009057Homeodomain-like
PROSITE profilePS5129415.4111163IPR017930Myb domain
SuperFamilySSF466892.73E-3014110IPR009057Homeodomain-like
SMARTSM007172.4E-131565IPR001005SANT/Myb domain
PfamPF002494.7E-151663IPR001005SANT/Myb domain
CDDcd001672.21E-91863No hitNo description
PROSITE profilePS5129426.18164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2867119IPR009057Homeodomain-like
SMARTSM007171.4E-1568116IPR001005SANT/Myb domain
PfamPF002492.8E-1569114IPR001005SANT/Myb domain
CDDcd001672.08E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWS PEEDLKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSAEEEEMI IKLHQSYGNK WSKIASQLPG RTDNEIKNVW HTHLKKRLVQ  120
SSENADEPAS PSASDCGSRG KVDKTQAEGC LNIKTSHDST SSVSSGGSNN SNQEDDPNRS  180
LMFEYSQFSD IIIQEVDKPD LLEIPFDSDI DIWSFLDDSN ANENSSASRA EEESDEDEVK  240
KWLKHLESEL GLEEDDQHHK EGEQDKDSSS SSLLNTYELM IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26161187108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1753441e-134AK175344.1 Arabidopsis thaliana mRNA for putative transcription factor (MYB63), complete cds, clone: RAFL21-78-M22.
GenBankAY5195721e-134AY519572.1 Arabidopsis thaliana MYB transcription factor (At1g79180) mRNA, complete cds.
GenBankBT0331251e-134BT033125.1 Arabidopsis thaliana unknown protein (At1g79180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652543.11e-160PREDICTED: myb-related protein Zm1
SwissprotP200242e-70MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A078DMT11e-161A0A078DMT1_BRANA; BnaC06g39570D protein
STRINGBra035097.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-129myb domain protein 63